PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894354.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YC
Protein Properties Length: 140aa    MW: 15838 Da    PI: 10.3104
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.81.5e-1511911897
           NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                    + e+P  r+kki+k d d++++ +ea  l+s + elf+  l+ rs   a e+kr+t+k   +  av+r   + dfl+d  p
  XP_015894354.1 11 RPEFPNGRVKKIMKLDRDINKVNSEALFLVSSSAELFLGFLAERSAKVAVEKKRKTVKLEHMRLAVKRHRpTSDFLLDSLP 91
                    5689**************************************************************9975389*****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-19677IPR009072Histone-fold
SuperFamilySSF471131.14E-181194IPR009072Histone-fold
PfamPF008081.1E-181376IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MAEEEETGKI RPEFPNGRVK KIMKLDRDIN KVNSEALFLV SSSAELFLGF LAERSAKVAV  60
EKKRKTVKLE HMRLAVKRHR PTSDFLLDSL PLPPQPSDQP ATERSRSRSV ADNSAPAGTR  120
RIDDFFHKPN NEAQVQINES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894354.16e-98PREDICTED: nuclear transcription factor Y subunit gamma-like
RefseqXP_015900875.16e-98PREDICTED: nuclear transcription factor Y subunit gamma-like
TrEMBLA0A0D2PU796e-66A0A0D2PU79_G
STRINGVIT_01s0010g03550.t012e-61(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.18e-47nuclear factor Y, subunit C13